A. Murat Eren (Meren)
A. Murat Eren (Meren)
I see. These are split profiles that lost the default collections during migration. That's very annoying, and I'm sorry about that :( You can use anvi-script-add-default-collection to add them back...
No worries, @alexanderjaffe! we will figure this out :)
# Problem OK. I've been looking at the files you kindly sent via email. I first migrated both of them, ```bash anvi-migrate *db --migrate-quickly ``` And then I could reproduce...
Great idea!! I'll happily look into this :)
I always wanted this myself. Full support from me.
For instance `export_sequences_from_contigs_db` can go into `seqeunces` and `store_dict_as_FASTA_file` can go into `files`. It is really difficult to do this in a way that one is certain that all choices...
This will require over 2,000 changes in the codebase o_O But I still think it is worth it, and will create a branch to work on this.
Hi @ivagljiva, Thank you so much for your input. I just realized that I missed your message by minutes before using the latest version of the mapping file, which is...
Hey @MjelleLab, we have some instructions here in the subsection "for manual downloads of the COG data (for COG 2020)": https://anvio.org/help/main/programs/anvi-setup-ncbi-cogs/ But while going through those I realized that it...
Dear @Hocnonsense, Thank you very much for this detailed report and discussion. I am very interested in diving into this but I want to make sure you experience these issues...