A. Murat Eren (Meren)

Hey @mschecht, Thanks for adding this! Here are a few coments: * You shouldn't be using `csv.reader` when anvi'o has all the necessary utils functions to read such data in,...

I think the best solution here is to delete everything under COG via ``` rm -rf /opt/conda/envs/anvioenv/lib/python3.6/site-packages/anvio/data/misc/COG/* ``` (while making extra sure there is no space between `*` and `/`)...

Sorry to hear, @lvelosuarez, but I'm glad it worked eventually :/ Because we insist on using upstream data rather than storing it in our distribution, server connectivity issues between you...

> guess what, I found the ghost changing the folder name! So how is this happening again? This should never happen: ``` ./COG20: COG14 ``` Both `COG14` and `COG20` should...

Nope. It's not about that either. I was able to setup both versions of COG without any problem in separate directories underneath a user-defined path: ``` >>> anvi-setup-ncbi-cogs --cog-data-dir COGS-DATA-DIR...

Hi @maziz2, This looks like an issue specific to your download. When I look at my file, this is what I see: ``` grep -A 2 CTC_RS10785,GCF_000007625.1,WP_035109085.1,876,303-876,574,COG0749,COG0749,1,570.0,1.0e-200,593,31-593 anvio/data/misc/COG/COG20/RAW_DATA_FROM_NCBI/cog-20.cog.csv CTC_RS10785,GCF_000007625.1,WP_035109085.1,876,303-876,574,COG0749,COG0749,1,570.0,1.0e-200,593,31-593 SE1367,GCF_000007645.1,NP_764922.1,903,323-903,581,COG0749,COG0749,1,632.0,1.0e-200,593,2-593...

That's very interesting, @maziz2. Thank you very much for the heads up.

@dineshkumarsrk and others: if you are willing to help with this error you can switch to the active branch (explained [here](https://merenlab.org/2016/06/26/installation-v2/#5-follow-the-active-development-youre-a-wizard-arry)), run, ``` anvi-setup-ncbi-cogs --reset ``` And follow the instructions...

Hi, Greg. What do you mean by _interactive display options_? Is it what is shown on the left side of the display? Menu items, etc?

Fair enough :) I guess we should shoot a video while we work on a dataset to highlight some best-practices.