A. Murat Eren (Meren)
A. Murat Eren (Meren)
OK. https://github.com/merenlab/anvio/tree/secondary-alignment-tracking is ready for you to play :)
I didn't have a chance to work on my solution to make it memory friendly yet. It will be there hopefully today perhaps.
OK. A new PR at #2371 solves the memory issues. But it comes with the following note: In its current state, the PR is partially complete as there is a...
I will look into this :) Thank you very much for the heads up, @renyx-1.
I just realized [this new release of COGs](https://ftp.ncbi.nlm.nih.gov/pub/COG/COG2024/data/) is missing a critical file, `cog-24.fa.gz`, which is [described](https://ftp.ncbi.nlm.nih.gov/pub/COG/COG2020/data/Readme.2020-11-25.txt) in the [previous release of COGs](https://ftp.ncbi.nlm.nih.gov/pub/COG/COG2020/data/) with the following line: > Gzipped FASTA...
Never mind. I found this page, and I will go from there: https://www.ncbi.nlm.nih.gov/research/cog
Hi @soojunglee98, please read the error message :)
Please note that when we merge this PR, every anvi'o installation that tracks the main branch (including those on our HPCs and elsewhere) will give the following error when someone...
I just wanted to see whether (1) this entire thing was working and (2) functions from COG20 were comparable to COG24. I used a Klebsiella genome, and then exported functions...
There is one last thing I want to mention. I learned that the FASTA file (COGorg24.faa.gz) contains sequences of all 7,698,004 proteins, but only 6,027,885 of those sequences are currently...