A. Murat Eren (Meren)
A. Murat Eren (Meren)
**PLEASE DON'T MERGE THIS PULL REQUEST WITHOUT COMPLETE CONSENSUS** This is a PR started by @isaacfink21 to save the original genome-view branch, which is in a difficult state due to...
**IF THIS NOTE IS HERE, ___DO NOT___ MERGE THIS BRANCH. IT IS BROKEN AND WILL RUIN THE ACTIVE DEVELOPMENT BRANCH.** --- This PR introduces some preliminary backend functionality in anvi'o...
## The need Anvi'o currently requires Python 3.6. Which is ancient .. and no longer supported. ## The solution The upgrade to Python 3.10 is not as simple as simply...
This is a followup to #1872, but I am writing it here to start a separate discussion on this. Background: now anvi'o has a way to help people define their...
## The need An extremely fast reporting of gene level coverages from a single profile database. Currently people either have to use ## The solution In his [response](https://anvio.slack.com/archives/C8SFMGYF3/p1631998761099300?thread_ts=1631723790.065300&cid=C8SFMGYF3) Emile Faure...
The new database database (likely a profile database with a `genome-view` variant) will serve as a medium to store/load states, bookmarks, and other key data. When it comes to processing...
This is to take advantage of our new set of tools introduced in PR #1649.
I wanted to mention this as a potential future design effort. I will use the contigs database as an example, but it is applicable to any anvi'o database. ## The...
## The need While we can display categorical data as either colors or text for a given layer through the 'Main' panel, we can only show them as colors for...
## The need SO I AM FINALLY TOO TIRED OF TYPING `-p PROFILE.db -c CONTIGS.db` EVERY TIME I WANT ANVI'O TO DO SOMETHING STUPID. JUST FIGURE IT OUT. MAKE IT...