A. Murat Eren (Meren)
A. Murat Eren (Meren)
You shouldn't have Python 3.12. Please follow the installation instructions word-by-word :)
Hey @Kekananen, Thank you very much for this. Many people asked us to consider doing this, and we avoided that all these years since it really makes the 'contigs-db' just...
Hi @Louis-MG, anvi'o already has a way to help the user to explicitly define a path for temporary files. Can you please try this and let us know if this...
We certainly can do that :) I will mark this as a small project in case someone wishes to add this feature into the codebase.
Some quick notes for anyone who wishes to work on this :) * All temporary directory operations are handled in here: https://github.com/merenlab/anvio/blob/master/anvio/filesnpaths.py -- `get_temp_directory_path` is the function that needs to...
Hey Tom, I think this is a great idea. Thank you for proposing it. It would be immensely helpful if you used default anvi'o files to characterize a genome with...
> we will share here that one as a FASTA and our estimated redundancy results A contigs-db would be much better! :)
Holy crap. This is really a very compelling case! :) Thank you, Tom.
Yes, a mixed case would also help. It will likely forever stay as a flag since we can't get used to the idea that we treat these SCGs in a...
This is excellent work, Mete! Thanks for evaluating other tools, as well. One quick question. Does this bar here will change if people zoom-in or zoom-out?  If not, we...