A. Murat Eren (Meren)
A. Murat Eren (Meren)
Thanks for figuring this out, @smdabdoub! We will keep this in mind!
hey @PeymanDerik, can you please run this command in your anvi'o environment: ``` mamba install pulp=2.7 ```
Thank you both very much. I'll take a look at this hopefully soon and fix this for `anvi-compute-functional-enrichment-across-genomes`.
Hi @MinLuke, please try the same in `anvio-dev`. This is a module with lots and lots of recent changes, and your experience with the development version would be very helpful...
@FlorianTrigodet's note on`structurepan.py` is spot on. I will leave some additional comments on the code directly :) I can't wait to test it. Florian, we will have to create a...
This is the error you get when you don't have foldseek: ``` Config Error: An anvi'o function needs 'foldseek' to be installed on your system, but it doesn't seem to...
And of course this PR should be accompanied by another PR for anvio.org to update the installation instructions so the users who install anvio-dev have all the necessary tools from...
When you run the following command, ``` anvi-pan-genome -g TEST-GENOMES.db -n TEST --mode structure --force-overwrite ``` Without setting up PROSTT5 first, you get the following error: ``` File/Path Error: No...
I haven't looked at the code yet, but this is not how we generally download things in anvi'o: If you look at KEGG or COG downloads as examples you will...
There is something annoying going on here and we need to fix it soon. As you can see here, SCGs (the red layer) are not coming together nicely anymore. As...