Marius Pachitariu

@dimos glad to hear it works now. The PCs are only used for initialization, and they are quickly forgotten during the template optimization. They are also used for visualization in...

Something is strange, you should be able to easily find PCs on which the clusters are bimodal and cut there. But first, have you isolated your groups of electrodes from...

Hi Hiro, 1. It looks like those are artifacts, such as you get with moving animals, chewing, etc. The problem with these is they are not so huge to be...

I am not sure at all what happened in your example. However, by default, 20% of the clusters are allowed to exist on all channels so they can capture global...

Does this happen for all clusters or just a small fraction? How long of a segment of time are you spike sorting? I wonder if the number of channels is...

Hi Qifan, I don't see anything suspicious in your configuration file. Do all clusters look like that? Can you show a larger selection, maybe all clusters on ch31 selected simultaneously?...

Can you check what the templates look like? Press o in Phy to switch between templates and snippets. The matrix DATA also holds some of the whitened data. You can...

Glad to hear it worked out, and thanks for your patience. There is indeed a buffer on each batch. If I hear of anyone using Kilosort in Beijing, I'll let...

Please take a look at the [file](https://github.com/cortex-lab/KiloSort/blob/master/configFiles/createChannelMapFile.m) This shows you how to create a channel map file for your own probe. If you want the channels to be run independently,...

Hi Marco, Seems like I missed this. I apologize. nt0 is the total duration of the spike in samples, and nt0min is the sample at which the minimum is aligned....