Marius Pachitariu

As @catubc suggests, you could do common average rejection, or just do the artifact detection yourself if you know exactly what this artifact looks like. In principle, Kilosort will remove...

Hi, Most of the options in there won't really affect the optimization, unless they are set to some extreme, unreasonable values. The options that do matter are Th and lam....

We usually record the entire time. Even if you don't use the data in-between blocks, it will still be useful information for sorting. Definitely concatenate before sorting. Matching clusters post-hoc...

Have you tried Nick's suggestions above?

Artifact removal is one of the most modular parts of the pipeline, so I encourage anyone who wants to write that code and contribute it. However, I encourage users to...

You can do this by setting to zeros the corresponding array of rez.dWU(:,:,k) = 0 for the cluster k you want to remove. Then run fullMPMU again. Keep in mind...

Sorry, I don't think we ever figured out where this behavior was coming from. Before the end of the month I will release Kilosort2, and if this problem persists, I...

Hi, I think you got it right. The feature template view reflects the figure 4 of the Kilosort paper: it is the projection of spikes onto the two selected templates,...

Which functions are from the Statistics and Machine Learning Toolbox? I think we are also using signal processing for filtering the data.

I see. You can replace those random numbers with any other positive distribution on the integers as long as you keep mean firing rates roughly the same.