Marius Pachitariu

Yes, this is what Kilosort2 was developed for. Yours look like slow drift, but we can also deal with moderately fast drift (few seconds). I am ironing out the kinks...

I am going to pull this in... if it breaks something, someone say something?

Thanks! @xigumalu can you please check this and if it's right I can merge the pull request.

The last change to spike deconvolution I remember was more than 5 months ago and it was a change in running baseline correction. If it's not that, have you checked...

Sorry, didn't see this last one. Could you double check your neuropil subtraction coefficients? We have not yet implemented an adaptive coefficient per neuron in the Python version (it's fixed...

Not yet, but I'm working on it now. It will track elongated dendrites, the same way the Python version does: https://twitter.com/marius10p/status/1032813204341239808

Hi Mehrab, Sorry for the delay in answering. There is currently no option to preserve trial structure, but we can add an option for that soon. I will let you...

I am aware of that problem, it happens because the first optimization uses spatial smoothing, but this is disabled during refinement so we can get more spatially sharp masks. When...

I think this has to do with Matlab's tiff loading library. setDirectory I think should go to the next frame. If this doesn't work, try to see if other methods...

Hi Dana, We have not encountered this data structure before. Suite2p assumes interleaved channels in the same tiff, so green/red/green/red/green red etc. If you can combine your tiffs in this...