Marius Pachitariu

I am not sure why that would be happening. Can you try the "extended_clustering" branch? That comes with an updated GUI that we will soon merge back into the main...

Thanks for catching that bug. I am not sure when we introduced it, but we never really use the baselines so we never noticed.

Suite2p is currently optimized for detecting localized ROIs. We think this makes sense also for dendrites. Take a look at the dendrites figure in the manuscript. Think about what you...

I think any clustering algorithm should work fine for merging branches. I would suggest something very basic, like computing a correlation matrix of all activity traces, thresholding it, and finding...

If you have a large tiff, I would recommend first breaking it out into chunks of

Can you give more details please? The Matlab version has always been able to load scanimage files. It also read the number of planes and channels from the headers. It...

I have replied in #594. The issue does not seem to be present in Kilosort4 probably because the new binary file functions work very differently, but if anyone finds it,...

@runbogao The latest release version 2.5.2 should fix this issue. Would be great if you could test it and give me some feedback.

@simon-ball thanks for finding this problem in 3.11. Bringing our dependencies forward is a big task and we don't have the manpower to do it very often. Since 3.10 EOL...

There is a good drift correction module in Scanimage based on suite2p which does something like this but automatically and with a nice GUI. We made this available in the...