Marius Pachitariu

Sorry for the slow reply. There is no right answer and it depends on the data. Try them and see what works best on one of your recordings. It's likely...

Kilosort 2 will release when we finish testing and ironing out a few bugs. I should have said it's not a good idea to go below 2x true number of...

The output should have the same shape as the data in PCspikes2.mat. Extract a bunch of spikes for example by threshold crossings, take 61 time samples, centered at sample 20,...

It's the minimum value of the spike. Yes, it relates to that hard-coded value.

Hmm, the position information is mostly used for visualization in Phy, and the underlying algorithm does not depend on it. It would require some changes nonetheless. I wonder though if...

Ok, I think Kilosort is ideal for that sort of thing because it doesn't force templates to be localized over channels like all other pipelines do. Instead it uses a...

Phy requires some position information to show waveforms spatially. You can specify it however you want, including as a single column of channels if you don't have any other information....

Hi Dimos, looks like your nt0 ends up even (24). Can you please try 25 and let us know if you get the same problem? - Marius

Hmm, maybe it is the batch buffer. That doesn't need to be changed, since it's just the overlap between consecutive batches that we need to resolve those boundary spikes. Can...

Ok about ops.NT, that should be fine.