Jared Simpson
Jared Simpson
If you extracted the reads with 0.7 you need to run that command to build the additional indices that 0.8 introduced. If you extracted with 0.8 it should work without...
Could you grab a stack trace? It would be interesting to see what parameters `Combinations` is being run with
Hi @SkabbiVML, Thanks for the questions, this is something I've been thinking about recently. > In the case of a large non-singleton event where some of the CpGs are methylated...
The intended use case for most applications is to cat all the fastq files together, then run `nanopolish index` once. Next week when I'm back at work I'll look into...
Hi @hasindu2008, Great to hear from you and nice catch. I think this would be a very nice addition. I'd have to think a bit about where the best place...
Which operating system are you on?
Also, could you try: ``` make clean make LIBS='-lrt -lz -ldl' ```
Hi, I think that data is very old so the format is probably no longer supported by nanopolish. If it is R9 data, you may try ONT's tools to reformat...
Hi, Sorry for the slow response. It is a hard question to answer - my guess is they are not independent. Jared
Hi, Thanks for reporting this. I'm on vacation for the next 10 days but I'll fix this when I get back. I will probably just output a genotype of "."...