Jared Simpson
Jared Simpson
When the user provides a sequencing summary file for a partially basecalled run, many reads will be indexed the slow way without indication to the user. Provide better messages in...
From @hasindu2008 1. `model_name` field in summary output is missing 2. window region command line argument is inconsistent with other subprograms
The support fraction calculation uses all input haplotypes so can be unstable depending on the number of tested variants. It may be better to calculate this based off the reference...
The `MM` tag describes the modification string relative to the sequencing read as generated by the instrument. For instance, consider this read, where only the 3rd C is modified: ```...
Hi, I am trying to install sonList on a Debian system. The compile fails with the following error: ``` gcc -std=c99 -O3 -g -Wall -Werror --pedantic -funroll-loops -lm -I inc...
# Issue Report ## Please describe the issue: When demultiplexing a barcoded run, the read group's `SM` tag appears to be populated from the `experiment_id` field in my sample sheet,...
Hi, Will the current version of dorado take barcodes into account when identifying duplex pairs, or does this need to be done separately and provided with the `--pairs` option to...
This should be fixed by making the documentation/output clear or by using one of the new forward-index only overlap algorithms (like in KmerOverlaps.h).
Merging sequences prior to sga assemble losing the vertex coverage information. This information must be kept to avoid popping bubbles and retaining the lower-coverage branch.