Jared Simpson
Jared Simpson
If the file is truncated it means guppy terminated abnormally so didn't close the file properly. If you only passed `sequencing_summary.txt` to nanopolish (and not `sequencing_summary.txt.prev`) then the truncation shouldn't...
Unfortunately you can't include multiple summary files, but you can merge them into one file, then provide that. I think you can simply `cat` the files (after removing the truncated...
Hi, 1. Unfortunately this is not possible. `nanopolish eventalign` is based on signal-to-basecall and basecall-to-reference alignments. Hence if some bases of the read are not aligned to the reference they...
Based on the k-mer size I guess this is RNA? If so, the signal analysis coming out of nanopolish can be a little complicated as the sequencing is in the...
Are you on OSX or Linux? Jared
I confirm I see the same thing if I install the latest version from conda. I don't know why this happens
Could you try `0.11.3`? The build script changed for 0.12.x
Yeah I need to fix the patch, no time right now though
The version number is hardcoded and I manually update it when I make a new release. In between releases it will show the version number of the last release. I...
Yes, that is the recommended way to speed it up. Jared > On Apr 25, 2020, at 4:51 AM, Milad Miladi wrote: > > > Hi, > > Is...