bids-validator
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bids-standard
Validator for the Brain Imaging Data Structure
original proposal as a PR in BIDS: https://github.com/bids-standard/bids-specification/pull/858 seems to be getting approved and if merged soon will enter a release after v1.6.0-203-g811e17e2 ,
ran from a singularity image on a datalad dataset in elderly git annex direct mode: ``` (datalad) [d31548v@discovery7 data_discovery]$ singularity run -B $PWD /XXX/bidsvalidator-1.7.2.sif $PWD [email protected] Unhandled rejection ( reason:...
In 1.7.3 and 1.8.1 validator will fail with EISDIR error trying to read .bidsignore as if it were a file. We should fail better here. Found an old install of...
I would like to open a discussion about bids-validator versioning and its impact on data providers/data analysts, particularly with respect to OpenNeuro. (This may not be the correct forum, but...
This stems from #1159. The validator needs rules for metadata related to qMRI files.
not a big issue but creates some duplications: https://github.com/bids-standard/bids-validator/blob/39922c4159688fcc67ba6b723d391991c75211e3/bids-validator/validators/json/schemas/pet.json#L13 https://github.com/bids-standard/bids-validator/blob/39922c4159688fcc67ba6b723d391991c75211e3/bids-validator/validators/json/schemas/common_definitions.json#L78 The only difference I see is that most PET "definition" have a minimum length criteria. Not sure how much of...
Hello, I have a dataset with pet images. I use the following naming scheme (as per [BIDS documentation on PET datasets](https://bids-specification.readthedocs.io/en/bep-009/04-modality-specific-files/09-positron-emission-tomography.html#positron-emission-tomography)): ``` sub-001/pet/sub-001_trc-18FFDG_rec-acstat_pet.nii.gz sub-001/pet/sub-001_trc-18FFDG_rec-acstat_pet.json ``` When I run `bids-validator` (version...
Dear BIDS community, within the new data sharing inititative for PET, [OpenNeuroPET](https://nru.dk/projects/openneuropet), there is some funding available for improving the BIDS validator. OpenNeuroPET (@CPernet @agt24 @mnoergaard) has been in contact...
copying to this public issue from a private chat: > wouldn't it be fairly easy to supply the web-validator as both `stable` (as done currently), AND `dev`? We can just...
I would like to suggest that a warning be raised if there are no References and Links in the dataset_description. It is easy to forget to include in the relief...
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Validator for the Brain Imaging Data Structure