bids-validator

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[WIP] Intendedfor checks overhaul

1

This is an attempt to centralize where checks for existing files for intendedFor fields happens. Motivated by #1415 and #1409 In nifti validation after checking that the intended for target...

rwblair

Re-implement testing "units" in BIDS metadata

5

Addresses #969. This code has been sitting unused for a long time. Does it need some overhauling or more testing?

DimitriPapadopoulos

1245 separate endpoints

1

This is the first step in creating two distributions of the validator for both ES and CommonJS modules. The next will be to abstract file handling to a common API...

david-nishi

WIP: Add NIRS support to BIDS Validator

25

This PR is to add NIRS support as described in the NIRS BEP - BEP: https://github.com/bids-standard/bids-specification/issues/438 - Example: https://github.com/bids-standard/bids-examples/pull/305 ----------- Note: - [ ] Revert all links to custom branch...

rob-luke

Based off google doc. todo/issues: - [ ] json schema does not have correct types for any of the object of objects, from the examples I could see some of...

rwblair

We have a pre-commit hook in one of the config files in this repo: https://github.com/bids-standard/bids-validator/blob/54046c1e5624af95baa414833f96e2b70d02ca0f/bids-validator/package.json#L81-L84 I would like to use it, but I am a bit confused how to install...

sappelhoff

phenotype tsv file with multiple rows for same subject

3

Hello, As mentioned [on Neuro Stars](https://neurostars.org/t/bids-validator-incorrect-error-for-duplicate-subjects/22874), the validator returns error [Code 51] PHENOTYPE_SUBJECTS_MISSING when a single subject appears multiple times (multiple rows). The error is misleading since the subject is...

Moo-Marc

Populate context data

1

Context objects have a variety of properties referenced in schema rules via selectors/checks. We need functions that produce the these objects organized as outlined in https://github.com/bids-standard/bids-specification/blob/master/src/schema/meta/context.yaml. Some like path and...

rwblair

For testing schema only validation runs we need to output summary data like current validator does: https://github.com/bids-standard/bids-validator/tree/master/bids-validator/utils/summary

rwblair

Automatically adding a brief summary to the output

1

I'm currently going through the process of summarizing many datasets on Openneuro that I've uploaded, or collaborators uploaded in the past. However, in order to run "reports" through e.g. pybids...

adam2392