bids-validator

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RF to use bids-specification/src/schema/ (via https://github.com/bids-standard/bids-schema?) as much as possible

1

https://github.com/bids-standard/bids-specification/tree/master/src/schema now (thanks to @tsalo for leading the effort) is now providing a machine readable specification sufficient to validate file paths and basic structure. We should start working on formalizing...

yarikoptic

EEG and iEEG "electrodes" and "coordsystem" files accept more entities than they should

3

crossref: - https://github.com/bids-standard/bids-validator/pull/1190#issuecomment-783520897 - https://github.com/bids-standard/bids-examples/issues/244 According to the spec, electrodes and coordsystem files should accept: - sub - ses - acq - space see https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/03-electroencephalography.html#electrodes-description-_electrodestsv But they accept many more....

sappelhoff

participants.tsv participant IDs not checked against folder names

2

For example ```tsv participant_id gender age aios_score subj-07xxxxxxxx M 41 70 subj-08a85ac6aa F 54 92 subj-08xxxxxxxx M 56 80 ``` While the folder were named `sub-07xxxxxxxx`, `sub-08a85ac6aa` and `sub-08xxxxxxxx` This...

arnodelorme

Validation crashes with code 0: internal error when JSON files begin with UTF-8 BOM

6

The validator should ignore the UTF-8 BOM at the start of JSON files to avoid crashing on parsing. Looks like this affects any JSON file but the specific case found...

nellh

Per today's maintainers call, we want to check that files from the same acquisition (e.g., ones with varying `part`, `echo`, or `split` entities) have the same `acq_time` value in the...

tsalo

Add a checkbox for empty file option to web interface

1

Could a checkbox be added to add the option to ignore issue 99 which is the empty raw file ignore. This would allow users to try validating the examples using...

VisLab

Validator reports incorrect dataset size

1

Links back to OpenNeuro: https://github.com/OpenNeuroOrg/openneuro/issues/391

ckrountree

That no .json, .tsv, .txt files have executable permissions (when operating on file systems allowing for such a luxury) EDIT SA: ... and address checks for file permissions to avoid...

yarikoptic

It would be good to get some version coverage for Node.js, at the moment there are some slight differences on Node 12. This does not seem to affect validation results...

nellh

Allow downstream programs to supply additional rules

2

PyBIDS uses the `bids_validator` Python library to filter files by default. It is not currently possible to augment this with additional rules to allow certain (pre-standard) new files without disabling...

effigies