bids-validator

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upper- vs lower- casing of file extensions: Validator should send informative error message

1

Upon uploading to OpenNeuro, I get an error for uploading an EDF file with `.EDF` extension. Apparently only `.edf` is valid, however, the error message is not so clear about...

adam2392

Throw warning for columns of beh.tsv with no data_dictionary

2

As far as I can tell columns in `_beh.tsv` with no associated data dictionary in a json will not raise a warning with the validator. It would probably be preferable...

Remi-Gau

Throw warning if `*_beh.tsv` has `onset` and `duration` column

2

A file with those columns should probably be an `events.tsv` in this case. Issue raised in this PR https://github.com/bids-standard/bids-validator/pull/1367#issue-1029095653

Remi-Gau

I am getting this type of error: ``` Type: Error File: sub-ctrl01_sbref.json Location: olf_blind_raw/sub-ctrl01/dwi/sub-ctrl01_sbref.json Reason: A json sidecar file was found without a corresponding data file ``` Although the file...

Remi-Gau

Versioning Question

4

Is there any relationship between bids-validator version and BIDS specification version? For example, I am preparing a BIDS dataset according to the latest BIDS specification (to the best of my...

soichih

Inconsistency in RepetitionTime between nifti header and json not detected

11

I just tested this on a manually converted dataset (and on the [MoAE SPM dataset](https://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.bids.zip)) by modifying the value in the json file and the validator did not detect it....

Remi-Gau

Permit bidsignored files in scans.tsv

2

There are unstandardized files that might nevertheless be appropriate to put in a scans.tsv. By putting them in `.bidsignore`, we get `[ERR] The filename in scans.tsv file does not match...

effigies

as described in https://github.com/bids-standard/bids-examples/pull/291#issuecomment-929407747 > The development build does require Node 14 now, but the user requirement is Node 12. The Node 12 end of life is pretty soon, so...

sappelhoff

overhaul units validation in bids-validator

10

we are currently in the final review round of a PR in bids-specification that will RECOMMEND CMIXF formatting of SI units: https://github.com/bids-standard/bids-specification/pull/411 Once that PR is merged, we should "switch...

sappelhoff

CI: Testing schema validation

1

Seeing about running all three validation modes from #1325 on bids-examples.

effigies