immunarch

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## 🐛 Bug If the input data has row with umis=2 but there is no row with umis=1, the chao1 function will return NA ## To Reproduce ```r vec=c(6, 2)...

shengqh

Update IMGT database using link in issue#262:https://github.com/immunomind/immunarch/issues/262

MVolobueva

".gene" request for OryctolagusCuniculus TRA, TRB, TRG, TRD

1

## 🚀 Feature We would really appreciate it if you could add the rabbit OryctolagusCuniculus as a supported species. Specifically, we need the following ".gene": rabbit TRA, TRB, TRG, TRD....

BinhDiep2021

Covid

3

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graceyraspberry

Update overlap.R

15

repOverlap chao_jaccard_abundance_index

abrown435

error installing/loading package

1

## 🐛 Bug I have tried to install and then load immunarch both using `install.packages("immunarch") ` and using `devtools::install_github("immunomind/immunarch")` and I get this error message: ``` > library(immunarch); Error: package...

tsonipeled

Loading 10x Genomics Data: Error in step_subset

8

Hello. I started with the [Loading 10x Genomics Data](https://immunarch.com/articles/web_only/load_10x.html) tutorial, downloaded the CSV files from [10X website](https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_c57bl6_pbmc_t?) and ran `immdata_10x

mdozmorov

Having more than one sample

1

Hi immunarch team I have 10x TCR and BCR sequencing + 5' GEX I have several samples For one sample I know I should do like this ``` > setwd("/Users/angel/Downloads/p1_sample_feature_bc_matrix")...

beginner984

Specifying multiple methods for repOverlap

2

Hello, with respect to `repOverlap`, is there a way to specify and compute more than one overlap metric at a time? Based on the source, it looks like you can...

Jdyn

sequencing batch effect

1

Hi, I would like to know if there is a way with Immunarch to analyse the TCRbeta repertoire data taking sequencing batch effects into account. Thnaks in advance!

BioinfoMonzino