immunarch

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issue with repDiversity

1

So I have been trying this ``` imm_raref

Ahmedalaraby20

Error in loading data of 10X with "missing value where TRUE/FALSE needed"

4

## ❓ Questions and Help Hi, thanks for reading. I meet a problem reading 10X data in the format of csv. When I load the data with: immdata_10x

chiaofengcheng

Visualization for diversity using "gini" method is missing, so add it.

pwwang

Does one should do downsampling before any kind of analysis including ["Basic analysis"](https://immunarch.com/articles/web_only/v3_basic_analysis.html)? Or downsampling should be done only before "Public clonotype", "Clonality", "Diversity", "Gene usage" analyses, and "Annotation and...

github-wow

How to split 10x genomics merged CSV by metadata

1

Hi, I have merged filtered_contig_annotations.csv generated by "cell ranger aggr" commands. This file contains metadata column. So, can I split the CSV file by metadata after repLoad?

amufaamo

repExplore of aa and nt give the same result

1

## 🐛 Bug Hi, I was wondering if I missunderstood it but shouldn't repExplore(immdata,.col="nt") and repExplore(immdata,.col="aa") give a different result ? For me it does not. I checked a little...

jeitziner

I understand this is an issue already addressed in a couple of other posted issues (#44 and #281), but both of them seem to be pointing towards downloading a different...

HyprValent

Clonotype file is being read in wrong - the same clonotype is being split into 2 different clonotypes.

3

## 🐛 Bug Clonotype file is being read in wrong - the same clonotype is being split into 2 different clonotypes. ## To Reproduce Steps to reproduce the behavior: 1....

ms3389

Error in `select()`: ! <text>:1:7: unexpected symbol 1: Using an

2

Hi! I am using `repExplore()` function and it is working ok, except when I try to do `exp_len

Biojenifer

Error in PHYLIP and repClonalFamily

4

## ❓ Questions and Help We have a set of [listed tutorials available on the website](https://immunarch.com/articles/). Hi~ I am using repClonalFamily and install the phylip, add the path to window...

Rongfang-Shen