immunarch

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How does Immunarch define a clone? (AIRR and 10x formats)

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## ❓ Questions and Help We have a set of [listed tutorials available on the website](https://immunarch.com/articles/). Hello, I am a Bioinformatician with iReceptor (https://gateway.ireceptor.org) and we are working on integrating...

kira-neller

Error in repload when loading metadata file

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I noticed a problem with the repload function when loading a metadata file. Everything works fine as long as just the "Sample" column in the metadata.txt file ist provided, such...

nkric

Data loading with BD Rhapsody

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Hi, I'm using BD Rhapsody VDJ scRNA-seq platform, but their output is quite different from others. So I transform the BD output into immunarch example file. But, BD has no...

wajm

Error in repLoad, unsupported format

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Hello, I am trying to analysis TCR data from a published article named"Pan-cancer single cell landscape of tumor-infiltrating T cells". But I failed in the input data, I used repLoad,...

mengfeiwangdmu

## ❓ Questions and Help We have a set of [listed tutorials available on the website](https://immunarch.com/articles/). Dear colleagues, When I apply fixVis() to any of my plots ( after vis()...

Valeriy-Tereshchenko

Get AIRR format data from 10x Genomics data

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I want to convert 10x Genomics single cell data to AIRR format. Is it possible?

amufaamo

True Diversity, D50 vs shannon entropy

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Hi, I'm newer to TCR analysis but most of the analyses that I see show Richness and Evenness in their analysis. I see that Immunarch can do Richness very easily...

talban14

dbAnnotate questions

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Hi! I am following the tutorial for annotating clonotypes using immune receptor databases, and I had a few questions. First, if I'm only working with data for one sample, am...

scas224

Integrate with seurat data

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## ❓ Questions and Help We have a set of [listed tutorials available on the website](https://immunarch.com/articles/). Hello, thank you for designing this great package. I have a question while analyzing...

fredust

Using 10x genomics data

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Hi! I'm brand new to using immunarch and am preparing to use it to analyze some cellranger vdj data from 10x genomics. I was a little confused in the "Loading...

scas224