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Cloud-native genomic dataframes and batch computing
Bumps org.ow2.asm:asm-util from 7.3.1 to 9.6. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) You can trigger a rebase of this PR by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- Dependabot commands...
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### What happened? - [ ] Document the AsyncFS interface, RouterAsyncFS, and the three clouds. - [ ] Do a critical pass of the interfaces and make sure public methods...
### What happened? Hello, I have some gwas results that I have converted into a pandas dataframe. Typically with dataframes I pickle my outputs for speed and easily maintaining data...
### What happened? I expected the deletion of a user to succeed. The UI page 500'd. ### Version 0.2.119 ### Relevant log output _No response_
### What happened? In particular, VDS is doubly sparse: 1. Sparse columns. Reference blocks are a form of run-length compression of homozygous reference calls. 2. Sparse alleles. Local alleles is...
### What happened? See discussion at https://atgu.slack.com/archives/CRA2TKTV0/p1699911268906349 The default behavior of assuming all the samples are unrelated is probably the wrong default. We might want to force the user to...
### What happened? The `hailtop` package contains some public interfaces like the `hailtop.batch` module, but also some internal utility modules that are subject to change without warning, like `hailtop.utils` or...
setup.py complains awfully when you invoke it directly. Apparently this sort of thing is unacceptable and the recommended workflow for building wheels is to use `build`. See the link below...
### What happened? How can we achieve this? ### Version 0.2.126 ### Relevant log output _No response_
### What happened? ``` =================================== FAILURES =================================== _______________ ServiceTests.test_python_job_incorrect_signature _______________ self = def setUp(self): # https://stackoverflow.com/questions/42332030/pytest-monkeypatch-setattr-inside-of-test-class-method self.monkeypatch = MonkeyPatch() self.backend = ServiceBackend() remote_tmpdir = get_remote_tmpdir('hailtop_test_batch_service_tests') if not remote_tmpdir.endswith('/'): remote_tmpdir +=...