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hail-is
Cloud-native genomic dataframes and batch computing
Bumps [rich](https://github.com/Textualize/rich) from 12.6.0 to 13.7.0. Release notes Sourced from rich's releases. The "It's a wrap" release [13.7.0] - 2023-11-15 Added Adds missing parameters to Panel.fit Textualize/rich#3142 Fixed Some text...
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### What happened? At time of writing, building hail with `SPARK_VERSION=3.4.0` errors with the following message: ``` hail/src/main/scala/is/hail/HailContext.scala:119:21: value implOpMulMatrix_DMD_DVD_eq_DVD is not a member of object breeze.linalg.DenseMatrix ``` This is...
### What happened? https://hail.zulipchat.com/#narrow/stream/123010-Hail-Query-0.2E2-support/topic/concatenate.20data.20from.20multiple.20files.20into.20table - [ ] skip_n_rows parameter to import_table which skips the first n rows. - [ ] add a filename field This is all in service of...
### What happened? Our OAuth2 client secret (stored in the k8s secret `auth-oauth2-client-secret`) and user service principal secrets (stored in k8s secrets like `NAME-gsa-key`) expire after a set period. In...
### What happened? GRh38 has patch versions. https://www.ncbi.nlm.nih.gov/grc/help/patches/ We need to understand how often our input data changes patch versions. We need to understand the ramifications of putting a patch...
### What happened? The GSA keys in Azure can expire without any notification to us developer or automated system to rotate them. This ticket is complete when: - [ ]...
### What happened? It seems like the event loop policy has changed again ### Version 0.2.126 ### Relevant log output ```shell (base) dking@wm28c-761 hail % HAIL_QUERY_BACKEND=service ipython Python 3.10.9 (main,...
Currently, when a QoB worker job fails in a way that prevents it from writing a result file with the error's stack trace in it, the Batch worker that started...
### What happened? We have been burned by rare transient errors in Google Cloud Storage three times now. 1. https://github.com/hail-is/hail/pull/14080 2. https://github.com/hail-is/hail/issues/13721 3. https://github.com/hail-is/hail/issues/13937 > Fool me once, shame on...
### What happened? To understand a running pipeline, I need realtime feedback on the profile, not just the final profile at the end of the job. I think `dump` will...