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Cloud-native genomic dataframes and batch computing

Results 235 hail issues
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We want to track Hail's performance with every release for a number of reasons, including but not limited to: - Measure how we are doing in delivering value to scientists...

Epic
query

Add hailctl fs as a cloud agnostic filesystem utility, along with two commands `ls` and `du`. Output is rudimentary at this point and is subject to change. du: ``` Usage:...

### What happened? Lindo tried to use JobResourceFiles a second time after updating the original batch, but got `FileNotFoundError`. This is because the default behavior is to delete temporary files...

bug
batch

### What happened? Batch should expose a job's cloud location to the job. In particular, now that multi-regional buckets charge egress, users needing large numbers of cores will need to...

new-feature
batch

### What happened? See https://github.com/ipython/ipython/issues/14297 ### Version 0.2.126 ### Relevant log output _No response_

bug
fs

See https://github.com/hail-is/hail/pull/14150.

WIP

### What happened? Based on conversation: https://hail.zulipchat.com/#narrow/stream/223457-Hail-Batch-support/topic/Cancelling.20audit.20trail/near/408632944 (I hope the format of the title is okay, I'm gently requesting this functionality). ### Version 0.2.126-01714cc51f09 ### Relevant log output _No response_

new-feature

from: https://discuss.hail.is/t/zip-length-mismatch-error/3548 ``` > > 2023-08-09 15:56:05.872 Hail: INFO: wrote table with 104 rows in 104 partitions to gs://gnomad-tmp-4day/__iruid_845-wg8w0gBbPsilRDfRegbVW3 INFO (constraint_pipeline 463): Copying log to logging bucket... 2023-08-09 15:56:33.276 Hail:...

bug
query

Bumps [rich](https://github.com/Textualize/rich) from 12.6.0 to 13.7.0. Release notes Sourced from rich's releases. The "It's a wrap" release [13.7.0] - 2023-11-15 Added Adds missing parameters to Panel.fit Textualize/rich#3142 Fixed Some text...

dependencies
python