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hail-is
Cloud-native genomic dataframes and batch computing
### What happened? It took me around 5 minutes to generate a hail.Table from pandas with shape 35000*67. The first column was ID in str type and the most following...
### What happened? A user reported this bug on discuss: https://discuss.hail.is/t/illegalargumentexception/3808. This looks like it may be related to #14420. ### Version 0.2.130 ### Relevant log output ```shell In [13]:...
[batch] Azure storage requirements beyond tempdisk for standing worker result in NotImplementedError
### What happened? Note: this is an Azure-specific issue. When submitting a batch/job that requests more storage than is available on the temp disk of any standing worker, but doesn't...
We got a [request in zulip](https://hail.zulipchat.com/#narrow/stream/127634-Feature-Requests/topic/String.20find) to add a function that works like the python [`str.find()`](https://docs.python.org/3/library/stdtypes.html#str.find) function. This should be straightforward. We just need to register a function in `StringFunctions`...
### What happened? See [Batch Metadata Server RFC](https://github.com/hail-is/hail-rfcs/blob/main/rfc/0012-keyless-job-auth.rst) for background. The objective of this issue is to fully remove GSA key files from Batch job filesystems, preventing possible exfiltration of...
Bumps [google-auth-oauthlib](https://github.com/GoogleCloudPlatform/google-auth-library-python-oauthlib) from 0.8.0 to 1.2.0. Release notes Sourced from google-auth-oauthlib's releases. v1.2.0 1.2.0 (2023-12-12) Features Add support for Python 3.12 (#318) (ac8d3ee) Bug Fixes Use setuptools.find_namespace_packages (#321) (9a0728d) v1.1.0...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [pytest-asyncio](https://github.com/pytest-dev/pytest-asyncio) from 0.21.1 to 0.23.6. Release notes Sourced from pytest-asyncio's releases. pytest-asyncio 0.23.6 0.23.6 (2024-03-19) Fix compatibility with pytest 8.2 #800 Known issues As of v0.23, pytest-asyncio attaches an...
### What happened? Due to limited GPU availability, it is common for GPU private jobs (esp. preemptible) to fail multiple times with exhausted resource errors before obtaining a VM. When...
### What happened? Hello, It looks like Hail has a hard coded check to only run on Java 8 and 11, despite Spark supporting Java 17 for a couple years...
