Daniel Baker

It's possible that you ran out of memory building the database. What genomes did you provide, and could I see the command you executed? Edit: I’ve also added checks during...

Hi Valentin, You have two options. First, you can concatenate and sketch them, or you can use the -F flag, which lets you generate one sketch per line of the...

Hi dejsha, I'm sorry to hear that you're having difficulties, and I'll try to find out where they're coming from. I've taken the latest dashing_s128 release and run a few...

Hi there! We don't have any preconfigured databases currently, but that is something we plan to put together for Dashing2 in the near future. You'd have to download the set...

Hi there! This is currently not supported, but it's something you could use Dashing to perform parts of the computation. If you perform sketching with --full-khash-sets, then Dashing will create...

Hi Liao, You're right, that probably isn't running out of memory. That was a bug, unfortunately, which I've found/fixed in [this branch](https://github.com/dnbaker/dashing/tree/quickfix), and it's now been merged into main [here](https://github.com/dnbaker/dashing/pull/81)....

Thanks for letting me know. What's your operating system? You could check if it has permissions (`cmhod 755 dashing_s128`), in case that fixes it. Otherwise, maybe cloning fresh and building...

By the way - while there's no such functionality in this software, I added to [Dashing2](https://github.com/dnbaker/dashing2) a feature which supports something like this. The feature uses the flag `--filterset `,...

Hi there -- It looks like there might be an issue about include paths and submodules. I'll check in on this and get it fixed soon. Thanks, Daniel

Update: there's one change in the bonsai repository, which I've updated for main [here](https://github.com/dnbaker/dashing/pull/79). You could update main and then update recursively, or you can edit the file in question...