Daniel Baker

Emit Intersection Size

9

Currently, dashing emits union sizes with `--sizes`, but not intersection size. You can get to that by subtracting the estimated set cardinality, but it would be preferable to emit it...

As requested in https://github.com/dnbaker/dashing/issues/32, and moving toward better feature parity with Mash, this would involve producing differing computation modes suited to pre-filter for similar items.

In case you're interested in a demonstration, I've added one to [my fork](https://github.com/dnbaker/branchless-utf8) which I used to see how to use UTF-8 in C. It does add a zlib dependency...

You've done some really fantastic work building your hash table implementation, and I'm looking at reusing it for a related application. As far as I understand, it looks like you...

Add Serialization for khash map

4

I've tested this on a map with 4096 keys, and kh_exist, kh_key, and kh_val all agreed between original and loaded maps. This only works, however, with maps, not sets.

Out-of-bounds/slightly incorrect Real DFT calculation

5

Hi, I might be calling the library incorrectly, but I've encountered this problem on two different operating systems (both of them Haswell/AVX2). I get segmentation fault/corrupted memory errors on both...

Eliminates use of function pointer for hashing and replaces `std::unordered_set` with khash.

[Request] Replace System.out.print* statements with System.err.print* for stream compatibility

3

The output of ABRA is, unfortunately, not necessarily coordinate-sorted, such that I would prefer to replace any usage with one that piped to samtools #sort. In addition, it would be...

It seems to be impossible to access the already-allocated aux tag array in BamTools. Currently, the way to access an array tag is to declare a compatible vector and then...