Daniel Baker
Results
7
repositories owned by
Daniel Baker
bonsai
70
Stars
11
Forks
Watchers
Bonsai: Fast, flexible taxonomic analysis and classification
dashing
159
Stars
11
Forks
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Fast and accurate genomic distances using HyperLogLog
dashing2
57
Stars
5
Forks
Watchers
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
sketch
149
Stars
14
Forks
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C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
frp
41
Stars
6
Forks
Watchers
FRP: Fast Random Projections
minicore
32
Stars
6
Forks
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Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.
bioseq
20
Stars
2
Forks
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Tokenizers and Machine Learning Models for biological sequence data