Daniel Baker

Hi Ahmad, Sure! First, Dashing emits the cardinalities of the input sequences, and then it emits pairwise similarities. Above, ` 1048218` is the estimated number of k-mers in the read...

One more thing to add: The union and intersection are related. |A OR B| = |A| + |B| - |A & B| the emitted quantity for the pair is |A...

Hi, sorry for the delay on responding. In this case, then 0.999992 is the containment score in one direction, while the containment score in the other direction was .73. This...

For the containment problem, it computes containment in both directions: |A & B| / |A|, and |A & B| / |B| is the other, meaning how many of k-mers from...

Hi ypchan, Thanks for the issue! I'm surprised by the failure to compile; did you clone dashing recursively? (`--recursive`?) I would expect `git clone --recursive dashing && cd dashing &&...

Hi Ben, Thanks for reporting the issue, and lscpu is really helpful. It looks like you have SSE instruction sets, AVX, and pclmul but not AVX2. Could you try a...

Try `make` again for the git repo, sometimes a second invocation helps. (I think it's a race condition in the Makefile due to the zlib.) What's your OS? We've tried...

Hi, It seems that dashing_128 was using AVX registers, even though avx2 was disabled. [This modified version](https://github.com/dnbaker/dashing/raw/master/release/linux/dashing_s128.gz) might work now. And I've modified how zstd is built, so if that...

Glad to hear it! I was also able to find what was causing the problem in parallel build. (`-j20` was fine, at least.) I've rebuilt the static builds as well....

Hi ben, Sure, let me try to get some updates into conda. Last I was working with them, the build was a bit more complex than they tend to prefer...