David Gault
David Gault
Issue was raised on forum thread https://forum.image.sc/t/bioformats-and-lif-files/46700/5 A sample file has been provided which reproduces the issue. The file `Images for James - RGB and BGR.lif` has 2 series, one...
Issue was raised by QA-29769 and a sample file was provided which reproduces the issue with Bio-Formats 6.6.0 The stack trace for the exception is: ``` loci.formats.FormatException: Unknown pixel type:...
This has been reported by a number of users, often who are applying LUT or in the case of https://forum.image.sc/t/saving-a-mask-with-bio-formats/34905 a threshold is applied to the image to create a...
This PR is an initial follow up to https://github.com/ome/bioformats/pull/3867 It replaces the existing Zstd implementation in the ZeissCZIReader with the new ZstdCodec. I added some additional methods to the codec...
This issue was raised on imagesc thread https://forum.image.sc/t/importing-a-multi-position-plate-czi-file-in-omero/72250 When imported into OMERO the plate is displayed but each well only contains a single field and the remaining images are located...
This is a follow up to the original PR https://github.com/ome/bioformats/pull/3880 Comparing the data repo updates to the equivalent HCImage data suggests that the magnification value should not be used for...
This issue was raised in forum thread https://forum.image.sc/t/data-import-bug-from-leica-containing-flim-and-tilescan-from-navigator/23551 Migrating this Issue from the original Trello card: A sample dataset is available for download and the issues have been reproduced with...
Initial PR for testing and discussion of a possible option for passing Memoization to sub readers. In this case each reader must wrap its sub readers, which leaves a significant...
Fixes https://github.com/ome/bioformats/issues/3560 This issue was raised in https://forum.image.sc/t/czi-reader-illuminationtype-mapping-and-exposuretime-units/37557/4 and a sample file showing the issue is available in QA-29273 This now parses the metadata value `Experiment|AcquisitionBlock|TimeSeriesSetup|Interval|TimeSpan|DefaultUnitFormat` and makes use of...
This is a test PR for a potential fix to https://github.com/ome/bioformats/issues/3510 Currently color correction is applied for any non Versa systems, in this case an SCN400 system has been used...