David Gault

FluoviewReader: Timepoints split over multiple files not recognized as single dataset

1

Issue was raised in forum thread https://forum.image.sc/t/how-to-open-video-in-matlab-using-bioformats-plugin-when-the-source-data-is-split-into-multiple-tif-files/99909/6 Sample files reproducing the issue in Bio-Formats 7.3.1 were provided and are available at `inbox/imagesc-99909` The sample data file consists of 2 TIFF...

FIJI plugin: Running Bio-Formats Exporter as a macro appends to existing file by default

1

See imagesc threads [here](https://forum.image.sc/t/beginners-experiences-on-using-ome-tiff/98077/18) and [here](https://forum.image.sc/t/macro-behaviour-of-bio-formats-exporter/100376) When running the Bio-Formats Exporter via the Plugin GUI and selecting an existing file, the user is prompted to confirm that they wish to...

CZI: fluorescent channels not displaying

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This issue was first raised on image.sc thread: https://forum.image.sc/t/axioscan-7-fluorescent-channels-not-displaying-in-qupath/94615/15 A sample files showing the issue is available on Zenodo: https://zenodo.org/records/12533989 The sample file is a 9 channel image acquired with...

bfconvert command line tool: Smarter resolution handling

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This request for first raised on the imagesc thread: https://forum.image.sc/t/bfconvert-size-of-smallest-pyramid-level/46282/4 There are 2 main requests from this thread: - The option to 'smart' create pyramid resolutions when only the option...