David Gault
David Gault
This issue was reported on forum thread https://forum.image.sc/t/ffmpeg-plugin-does-not-support-virtual-stack-slice-deletion/81112. The exception occurs after importing a file using the Bio-Formats plugin as a virtual stack and then running the `Image > Stacks...
Issue was raised via QA-32932 and a sample file was provided that reproduces the issue with Bio-Formats 6.13.0 When attempting to open the file it fails during initialisation and the...
This issue was raised on forum thread https://forum.image.sc/t/nd2-metadata-wrongly-parsed/80198 and a sample file has been provided that reproduces the issue with Bio-Formats 6.12.0. The sample file is located at `scratch/inbox/imagesc-80198`. The...
This issue was raised on forum thread https://forum.image.sc/t/tiling-issue-when-opening-leica-mica-lif-images-in-fiji-bio-formats/79769 Previous images had been exported containing both the individual tiles and a merged image. The user had been able to open the...
This issue was raised on forum thread https://forum.image.sc/t/czi-pyramidal-with-bioformat/73215/10 and a set of sample files provided (https://wetransfer.com/downloads/5021c67300c122c50c8394172155318c20221201105414/b5cb3f, Note: David to upload sample files to repo inbox). When attempting to open the...
Request was raised on forum thread: https://forum.image.sc/t/fiji-image-title-convention-for-multiscene-czi-with-bio-formats-importer/74619/4 The issue raised in relation to CZI multiscene files but more flexible title options would also be useful for other formats. The main...
This issue was raised on forum thread https://forum.image.sc/t/qupath-cant-open-svs-images-from-aperio-versa-slide-scanner/93502/8 and appears to be very similar to issues seen with other formats such as https://github.com/ome/bioformats/issues/3510 The files showing the issue ere acquired...
Issue was raised on forum thread https://forum.image.sc/t/how-to-open-ims-files-with-fiji/29907/12 A sample file was provided on https://zenodo.org/records/11203497 and can be used for testing The problem appears to be due to the colors in...
Issue was raised on forum thread https://forum.image.sc/t/how-to-split-and-recombine-multiple-series-with-bfconvert/73662/2 In the thread the user had a multi resolution file (SCN format) with additional macro and label images and wanted only the image...
This request comes from forum thread https://forum.image.sc/t/saving-tiff-using-bioformats/34932/2 For OME-TIFF physical size is populated for X, Y, Z. However for standard TIFF it is only available for X and Y. It...