David Gault
David Gault
This issue was raised in the forum thread https://forum.image.sc/t/wrong-dimensions-for-some-images-when-reading-olympus-oir-files/65533 Sample files have been provided which reproduce the issue with the latest Bio-Formats (6.9.0) The sample files are showing incorrect dimensions,...
An initial prototype of potential new API methods for reading and writing N dimensional chunks of data rather than 2d planes/tiles. These new methods currently have default implementations in FormatReader...
This issue was raised on forum thread https://forum.image.sc/t/issue-with-czi-metadata/63836/5 A sample file was provided that reproduces the issue with Bio-Formats 6.9.0 The image consists of 6 tiles (2x3), each with dimensions...
This issue was discover via a QA report in QA-30888 and a sample file is availble in the same QA demonstrating the issue with Bio-Formats 6.9.0 The initial stack trace...
This issue was raised on the forum thread https://forum.image.sc/t/czi-multiscene-file-the-second-scene-is-black/63782 A sample file has been provided which reproduces the issue with Bio-Formats 6.9.0 The provided sample file has 2 scenes each...
This PR is in response to forum thread https://forum.image.sc/t/issue-with-stk-timelapse-import-to-omero-or-fiji-with-bio-formats/54644 The VisiView software is generating STK files (no associated ND file) which can be handled by the existing MetaMorphReader, this PR...
This issue was raised on imagesc thread https://forum.image.sc/t/jpeg-invalid-scanline-stride-and-restart-interval-and-markers-invalid/63045 and a sample file was provided that reproduces the issue with Bio-Formats 6.8.1. The following stack trace is observed with both invalid...
This PR attempts to merge the IDR specific Flex changes from https://github.com/IDR/bioformats/commits/master/components/formats-gpl/src/loci/formats/in/FlexReader.java It also adds a new option flex.`group.plate` which can be used to configure the IDR behaviour. Based on...
This issue was first raised on forum thread: https://forum.image.sc/t/leica-scn-images-with-wrong-colour/34077/2 SCN files have been reported to import with a pink background with a grey colour as below:   Two sample...
Issue was raised on forum thread https://forum.image.sc/t/nd2-rgb-import-issue/60901 and a sample file reproducing the issue is available on Zenodo - https://zenodo.org/record/5772393#.YbNTrPnP1Zc When the ND2 file is opened using Bio-Formats 6.8.0 and...