SpecHLA
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deepomicslab
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...
HIello, for long read hla typing , specHLA will call annoHLA.pl . I have read the whole long_read_typing.py, but cannot find any code to create $sample.realign.sort.bam . for the below...
Hello, I got a question about why you set bias value to "correct" gaps open (blastn result ) . $hash12{$hla} += $m + $d * $bias; for long reads bias...
Hello and thank you for your great tool! It works great on my samples. I have a question regarding one of my samples, which is ultra-pure tumor (> 90% based...
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SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...