Daniel Straub

Unfortunately short read single end data isnt working with bacass. FW & RV read need to be present in order to be parsed [here](https://github.com/nf-core/bacass/blob/959967364c7c0105b5b271acf0441fa9290e0d4c/subworkflows/local/input_check.nf#L20-L24), and `single_end=false` is hardcoded [here](https://github.com/nf-core/bacass/blob/959967364c7c0105b5b271acf0441fa9290e0d4c/subworkflows/local/input_check.nf#L45). It...

Agreed, I'll put it on the list for the next release!

I was made aware that in https://nf-co.re/bacass/2.0.0/usage#samplesheet it is not specified that it must be tab-separated (but the example is fine), that needs changing as well.

Hi, here hopefully helpful answers: > I'm pretty sure there is something wrong with the input samplesheet and that's how I found this conversation. However, I'm still confused which file...

Could you check whether your entry is exactly `NA`, no spaces, or something else additionally? You could also upload here the csv file if you'd like.

That could be considered, yes. Thanks for the suggestion! I'd not call it a "bug" though, because it came from user-error not pipeline error. Essentially it is adding a check...

True, thanks for the report, will be fixed in a new version!

Hi there, after having a short look, yes, this seems possible. However I cannot say how long it might take (me?) to do this. If you are willing to contribute,...

Very interesting discussion! I think we do need to evaluate this, but this seems more than just an afternoon of work. > Is there already a data set for benchmarking,...

Hi there, I actually never looked into that. Therefore I am not aware of a solution or whether it could be implemented. Maybe someone else could chime in. For more...