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sample sheet check reports wrong row item

Open antunderwood opened this issue 4 years ago • 1 comments

In the checks for long reads and fast5 files the wrong file is reported if there is an error

https://github.com/nf-core/bacass/blob/959967364c7c0105b5b271acf0441fa9290e0d4c/subworkflows/local/input_check.nf#L66

Should read

 exit 1, "ERROR: Please check input samplesheet -> Long FastQ file does not exist!\n${row.LongFastQ}"

https://github.com/nf-core/bacass/blob/959967364c7c0105b5b271acf0441fa9290e0d4c/subworkflows/local/input_check.nf#L74

Should read

exit 1, "ERROR: Please check input samplesheet -> Fast5 file does not exist!\n${row.Fast5}"

antunderwood avatar Sep 09 '21 10:09 antunderwood

True, thanks for the report, will be fixed in a new version!

d4straub avatar Sep 13 '21 07:09 d4straub