bacass icon indicating copy to clipboard operation
bacass copied to clipboard

Published 20 hours ago • verified publisher icon nf-core

Single end Illumina processing?

Open limey-bean opened this issue 2 years ago • 1 comments

Is there a way to process single end reads with bacass? I am attempting to modify config files, and it would be amazing if you already had a solution in hand.

Best, Emily

limey-bean avatar Mar 08 '23 22:03 limey-bean

Unfortunately short read single end data isnt working with bacass. FW & RV read need to be present in order to be parsed here, and single_end=false is hardcoded here. It seems here it was planned to support SE data but then it wasnt. So it wont be enough to modify configs, the input sheet parsing is not made for single end data.

d4straub avatar Mar 09 '23 08:03 d4straub