Daniel Straub

Indeed, there are bins! Could you check what `/work/f3/7d3ba52b1375b555acf375a6671e9a/MEGAHIT-MetaBAT2-41472-2_S6-binDepths.tsv` contains? Maybe there is an empty value, following `raise ValueError("The number of observations cannot be determined on "`? _edit: the file...

To my knowledge only 2. works.

Thanks, I also think that is a much more welcoming message and sounds much less barrier-heavy! The point that is in my opinion not perfectly addressed are smaller contributions. Smaller...

Hi there, thanks for the report. A few details are missing: (1) How do you specify the number of cores, I dont see that in the command. (2) What is...

Close due to lack of information.

Thanks! The error message in that log file is: ``` Jul-19 16:20:51.757 [TaskFinalizer-5] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_DIVERSITY_BETA (unweighted_unifrac_distance_matrix - HatcheryGut_Stayton_vs_HatcheryGut_Marion)' Caused by: Process `NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_DIVERSITY_BETA (unweighted_unifrac_distance_matrix -...

I am not sure what causes this error. It seems to me pretty likely that its a problem with the tmp dir (maybe full or was deleted at that specific...

Did you figure out the issue or did you find a fix?

Hi, I finally tested it with the `-profile test` on our hpc. With `cpus = 128` for `QIIME2_DIVERSITY_BETA` the wall time increased from 20 sec to almost 4 min, but...

As of now ([3.18.0](https://nf-co.re/rnaseq/3.18.0/docs/usage#prokaryotic-genome-annotations)) the documentation didnt change much. Also, I couldn't run the pipeline following these suggestions recently. I was using data for E. coli strain BW25113 (4522 genes,...