Colin Diesh

could make "larger than screen" exports for example

Auto-adjust track heights to their current layout height

27

I think many times if a track is auto-adjusted to it's current layout height, which is bounded by a maxHeight, it can be better than if the track has a...

Create defaultSession spec for config.json files to load simplified default sessions

7

Currently, the defaultSession is a raw snapshot of internal app state. There are efforts that can be made to simplify that internal state to some extent, but in addition to...

Launch breakpoint split view from variant feature details doesn't handle multiple ALT alleles

1

currently it passes the 'feature' to "snapshotFromBreakendFeature" which only looks at alt[0] the variant feature details might display multiple ALT but all of them would nav with alt[0]

these cause bundler warnings and not good practice rollup produces two errors from jbrowse/core ``` !) Circular dependencies ../node_modules/@jbrowse/core/ui/Dialog.js -> ../node_modules/@jbrowse/core/ui/ErrorMessage.js -> ../node_modules/@jbrowse/core/ui/ErrorMessageStackTraceDialog.js -> ../node_modules/@jbrowse/core/ui/Dialog.js ../node_modules/@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes.js -> ../node_modules/@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js -> ../node_modules/@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes.js...

Add ability to launch split view from VCF feature details for DEL/INV type features

1

It could be useful to see these in the context of the breakpoint split view

Refactor jbrowse-cli text-index to use packages/text-indexing

1

i think @jbrowse/cli can depend on packages/text-indexing and potentially unify codebases

Modify re-exports for default exports

1

Possible fix for cross-repo jbrowse-plugin-template issue https://github.com/GMOD/jbrowse-plugin-template/issues/45 Was not able to verify this fix with yarn link but might be a way forward

See https://typescript-eslint.io/rules/strict-boolean-expressions would try to catch issues where you need to be more explicit about comparisons against undefined motivated by #4234 where there were some number|undefined being used but if...

JBrowse desktop (occasionally?) crashes on quit on mac

6

on selecting "Quit" from the jbrowse desktop mac app, i sometime see a crash. tested with v2.10.2 not sure if it's just my machine or not, and it seems like...