Colin Diesh

Follow up to thread here https://github.com/galaxyproject/tools-iuc/issues/6523#issuecomment-2475801035

Question about making a per-modification bedMethyl score

4

I want to plot a 'reasonable' value that shows the "percent of a particular type of modification is present, relative to total coverage". the fraction modified is a good value...

This is an experimental attempt at removing caching from the bam-js library. The cache size is basically uncontrolled and can result in essentially a memory leak. Additionally, in normal jbrowse...

Possible memory optimizations

1

Some amount of optimization could be done to keep memory usage lower For example: the each read has a seq field (and others) that are decoded to a string. But...

[data grid][docs] CSS loader needed for x-data-grid v8.0.0?

18

### Related page https://mui.com/blog/mui-x-v8/ ### Kind of issue Unclear explanations ### Issue description I saw that between v8.0.0-beta.3 and v8.0.0 of x-data-grid maybe there is a new need to use...

Delay Before Popover Disappears (especially for cascading menus)

3

Currently, if you mouseover outside of a cascading menu for just a brief second, it closes the menu. It might be desirable to keep the menu open though This thread...

Unable to work in react 19(?)

1

### Please describe the bug you are seeing During dev mode produces this "warning" ``` ✔ Client Compiled successfully in 4.57s [WARNING] {"moduleIdentifier":"/Users/colin/src/jbrowse-components/website/node_modules/babel-loader/lib/index.js??ruleSet[1].rules[5].use[0]!/Users/colin/src/jbrowse-components/website/node_modules/@cmfcmf/docusaurus-search-local/lib/client/theme/SearchBar/index.js","moduleName":"./node_modules/@cmfcmf/docusaurus-search-local/lib/client/theme/SearchBar/index.js","loc":"9:40-46","message":"export 'render' (imported as 'render') was not found...

Update babel6->babel7, webpack4->webpack5

2

- Avoid precedence of some global classes - Update to webpack 5 - Update to babel 7 This change might not be truly needed but it modrnizes the build stack...

This moves the responsibility for interpreting what a '.' might be to the client Example of where this was acting in a funky way in jbrowse A haploid "." in...

The latest VCF 4.5 claims INFO.END is deprecated ``` END: Deprecated. Retained for backwards compatibility with earlier versions of VCF and older VCF indexing software which rely on this field...