Colin Diesh

this has been requested by people who embed the linear genome view as it can be odd for a view to just be small height to start, and then occupy...

If we implement the collapsed intron feature, then the collapsed areas are represented by a sequence of discontinuous displayedRegions Sometimes the features are a little hard to see at the...

Currently, many things in the jbrowse UI requires fair amount of point and click. We could create a system for keyboard shortcuts, and i'm specifically inspired by the "ctrl+k"/"command palette"...

Strip default items from session snapshots(?)

1

this could be a large-ish task but session snapshots tend to be kind of bloated with a lot of default values being included. config snapshots specifically have logic to remove...

### Discussed in https://github.com/GMOD/jbrowse-components/discussions/4467 Originally posted by **LankyAlec** June 25, 2024 Hi, Several users of the genome browser, version react-linear-genome-view, which I manage, are complaining that when they set genomic...

users can run out of local storage limits with large sessions see https://github.com/GMOD/jbrowse-components/issues/3575 for motivation needs work still but this is a draft

This is an attempt to start to add more tutorials to the website, showing how to do certain tasks. My vision is mostly to show the user what steps are...

the concept of local alleles was addd in vcf 4.5 the VCF 4.5 spec suggests: "It is recommended that VCF libraries provide an API in which local allele encoding can...

Increase test coverage

1

It could be worth it to find test files to increase code coverage. Notably the LTF8 code is not completely covered for larger values, and these are somewhat tricky to...

Allow requesting by string based refName instead of making end user resolve from refID

1

see in README that the user has to create a refId to seqName "mapping" we should be able to contain this complexity in the library to allow requesting by seqName