hifiasm
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chhylp123
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Dear all, I have been running hifiasm on two very repetitive genomes (>70% repeat content) using relatively deep HiFi libraries (60x-80x). The results are not that great and the genome...
Is it possible to find out where the positions of the joints/overlaps are in the contigs of an hifiasm assembly ?
Thank you very much for your suggestion. We only used hifi data, and after adding the -l 0 parameter, the result showed that the genome was 10M in multiple places...
Hi, The previous reports on the plant we study on suggested it was diploid, but our own assembly results indicate that it may be a homologous tetraploid. The results are...
Hi, thanks for your hic integration work to make phasing much easier especially in animal genome assembly. I have run a number of mamal genome assemblies under this mode. Most...
Hi! We are planning to sequence a whole bunch of matching samples from Tumor-Normal pairs. My question is should we sequence HiC for all the sample-sets (incl tumors) or should...
Hi, I am running hifiasm 0.19.5-r592 like this: hifiasm -o Outfile -t 37 1.ccs.fastq.gz 2.ccs.fastq.gz I don't have Hi-C data or parental information. The end of the run looks like...
Aborted run
Not sure if this error is helpful! So please give me some direction on what I need to post! [M::ha_opt_update_cov] updated max_n_chain to 100 hifiasm: inter.cpp:16098: void gen_trans_base_count_comp(ug_trans_t*, kv_u_trans_t*): Assertion...
Hello, the species I studied is haploid. After using hifiasm software to assemble hifi and ont data, the test.bp.p_ctg.gfa results showed that the genome size was correct and there were...