hifiasm
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chhylp123
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hi, I´m using the Trio Binning strategy on a hybrid fish species. I know the ID of the mother, but I have two possible fathers. I´m thinking of mixing the...
One of the key benefits of adding ONT to a PacBio HiFi assembly is to fill in the all the gaps arising from GA(n) coverage drop outs. Thus, in these...
Thank you so much for making such a great tool. It helped a lot with haplotype-resolving my genome. I have a question about the result file. I proceeded assembly with...
Hello, I have a hypermemory problem: The error message is as follows: ============================================================== [M::ha_hist_line] rest: ****************************************************************************************************> 50214823 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_ft_gen] peak_hom: 53; peak_het: -1 [M::ha_ct_shrink::20212.227*5.86] ==>...
Hi, I have HiFi reads, ONT-reads, HiC reads, and parents illumina short reads. So, I ran hifiasm with trio-binning mode to conduct haplotype assembly with the code 'hifiasm -o prefix.asm...
Hi, Thanks for developing the package! I have a few dozens of samples with captured PacBio hifi reads averaging 4kb in length but >200x coverage in a 1.6Mb human genome...
Fixes https://github.com/chhylp123/hifiasm/issues/288 Uses https://github.com/DLTcollab/sse2neon to translate SSE instructions to NEON ones.
I am involved in a genome project for a wild animal species with a huge genome (6.5 Gb). We expect the genome to be highly heterozygous, and perhaps over half...
Hi, I assembled the genome of allotetraploid species using hifiasm with size of ~3.7gb. I used the PacBio HiFi reads in Merqury for kmer analysis of genome estimation of our...
I am running different assemblies using different numbers of SMRT cells with hifiasm v0.13 on ccs hifi reads (corrected reads in fastq). The sequences generated from homozygote diploid wheat I...
