hifiasm
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chhylp123
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Dear developers of this great assembler, I have a question concerning a weird k-mers histogram with 3 peaks for a definitely diploid fish genome. Please find the attached k-mers histogram...
Hello hifiasm team, Compiling on macOS ARM has the following error: g++ -c -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall CommandLines.cpp -o CommandLines.o g++ -c -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall...
Hi, I have a question regarding using parental HiFi instead of Illumina data for a trio-phased assembly (all experiments done with recent versions of hifiasm and yak). When doing this,...
I assemble a haploid insect genome by using hifiasm v0.16.1-r375. It should be noted that my species has only one set of chromosomes lacking of paternal chromosome because it develops...
Hi, I have used hifiasm successfully several times in the past. However lately I am running into some strange behaviour. The subject I am trying to assemble is half the...
Here is an example:  The coverage depths of A, B, B' and C are even, so the structure is expected to be A-B-B'-C or A-B'-B-C where B and B'...
Hi, i'm working on Bovine genome and i am facing haplotype problem with hifiasm. I did an assembly with hifiasm V0.15 with following command : hifiasm -t 32 -o HN_Simple.asm...
When I extract the contig length and coverage from the p_ctg gfa file and plot them. A small portion of the contigs are long (Mb or larger) and have the...
Hello, the genome size of our species estimated by kmer is around 1Gb. Estimated by FCM was 900M.  However, using hifiasm we got p_ctg 622M, a_ctg 430M(without HiC), and...
Dear writer, I was very confused about the assembly results with Hi-C data. I used hifiasm to assemble a triploid genome, and the result looks perfect with N50 > 15M...
