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Published 20 hours ago • verified publisher icon chhylp123

problem of assembly

Open hchen815 opened this issue 9 months ago • 1 comments

Hi, The previous reports on the plant we study on suggested it was diploid, but our own assembly results indicate that it may be a homologous tetraploid. The results are attached. Based on these findings, can we confirm that it is indeed a homologous tetraploid? If so, should we reassemble it using hifiasm? Do we need to adjust any parameters? if it is possible, could you please give us some suggestions on chromosome attachment?

assembly.pdf

hchen815 avatar Sep 19 '23 01:09 hchen815

It looks like a tetraploid genome. It might be better to run purge_dups for the primary assembly of hifiasm.

chhylp123 avatar Sep 19 '23 13:09 chhylp123