calour
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biocore
exploratory and interactive microbiome analyses based on heatmaps
Add type hints to return values of additional calour functions Add initialization of Experiment.info dict if not provided as a parameter to calour.Experiment() NOTE: in database.py, moved the _get_database_class() method...
if we try to specify rotation, get an error it is already defined
so if a color does not appear in the dict, set it to white
if number of samples of features is 0, raise a relevant error instead of weird fail
Unable to install calour from github. Probably because github change the cloning protocol. Here are the output. `pip install git+git://github.com/biocore/calour.git ` ``` Collecting git+git://github.com/biocore/calour.git Cloning git://github.com/biocore/calour.git to /tmp/pip-req-build-lsza8h57 Running command...
Loading an experiment with Normalize=False still loads the data as float and then when doing subsample_count(), we get the error data is normalized (can overcome by setting the data to...
if one of the group values provided results in 0 samples, should raise a specific error explaining the problem
seems it is just ignored? getting same results as with field=None
expects a list of values. need to enable single value like the filter_samples() or raise an informative error
Current implementation when processing non-microbiome experiment, default is linear, and hard to find out what to supply to make it log scale