calour
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biocore
exploratory and interactive microbiome analyses based on heatmaps
so each row is normalized mean 0 std 1 or similar
This is a growing list whenever small things pop up. This is to be fixed at last after other changes are made. - [ ] analysis.py line 85: * 'filterBH'...
in order to make easier install on windows and get rid of dependcy/warnings We have 2 places where we still use skbio: * transforming.subsample_count() - need to rewrite it (and...
Add a flag to save biom table with integer values (maybe revert to the unnormalized read counts?) this is to enable downstream processing in qiime2
heatmap default scale not log, colormap and functions
double definition of 'sep'
The current coloring scale of calour is based on the values of the data. maybe it be better if we can have a switch that will change the colors according...
add a small bar to track your current view position in the heatmap when zoomed in (original idea from Rotem)
It would be really cool if there was a paired heatmap interface in calour. This would be especially useful for linking paired omics datasets. We have a PR here: https://github.com/biocore/rhapsody/pull/75...
It looks like the save functionality is having some issues on my install. I can't seem to download the png via the save button - is this expected? 