calour
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biocore
exploratory and interactive microbiome analyses based on heatmaps
so it returns the new `Experiment` object containing the non-statistically significant features.
I currently have matplotlib 1.5.x and ete3 and other software depends on it, thus I cannot have color bars for samples. It throws this error msg: AttributeError: 'LinearSegmentedColormap' object has...
when importing with gnps file, add the feature metadata based on clusterindex then sort by clusterindex and colorbar to see what's going on in each cluster
Hello @amnona and @RNAer , in the past days I tested calour. It is an awesome piece of work! I came up with a few comments. I am going to...
Would you guys be interested in incorporating niche_sort? https://github.com/biocore/gneiss/blob/master/gneiss/sort.py#L91 In my experience, this has been incredibly useful for 1. Sorting bacteria along a gradient 2. Sorting bacteria by how associated...
I haven't read the documentation too close, thus I called read_amplicon() with normalize=False with the unexpected result that all values are 0. You should warn the user.
...otherwise there will be effectively a large redevelopment of BIOM. We've already gone through the exercise of exploring dense vs. sparse representations in that project, and with good reason, we...
