calour
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Installation problems
Unable to install calour from github. Probably because github change the cloning protocol. Here are the output.
pip install git+git://github.com/biocore/calour.git
Collecting git+git://github.com/biocore/calour.git
Cloning git://github.com/biocore/calour.git to /tmp/pip-req-build-lsza8h57
Running command git clone -q git://github.com/biocore/calour.git /tmp/pip-req-build-lsza8h57
fatal: remote error:
The unauthenticated git protocol on port 9418 is no longer supported.
Please see https://github.blog/2021-09-01-improving-git-protocol-security-github/ for more information.
WARNING: Discarding git+git://github.com/biocore/calour.git. Command errored out with exit status 128: git clone -q git://github.com/biocore/calour.git /tmp/pip-req-build-lsza8h57 Check the logs for full command output.
ERROR: Command errored out with exit status 128: git clone -q git://github.com/biocore/calour.git /tmp/pip-req-build-lsza8h57 Check the logs for full command output.
ps1_fortune:2: command not found: fortune
I succeeded to install it with clone it to the computer (with gh repo clone biocore/calour; python calour/setup.py install
) and install the dependencies.