Jim Balhoff

Ensure: - a term has a namespace declaration - a term has only one namespace declaration - the namespace is one of the 3 GO namespaces

create report: Metacyc xrefs in ontology that are not in Rhea

7

We are considering importing these mappings fully from Rhea. It would be useful to know which mappings are in the ontology that we wouldn't get if we just import from...

Rhea provides downloadable mappings to KEGG and MetaCyc. We could automatically add xrefs to those via manually curated Rhea xrefs. First we should check if there are KEGG and MetaCyc...

Add check for obsolete EC refs.

1

For #21347. This PR will fail until existing obsolete EC xrefs are fixed: - [ ] ERROR: has an xref to an obsolete EC: "EC:2.7.8.n3" - [ ] ERROR: has...

Add present_in_taxon statements

5

Add present_in_taxon statements for male and female external genitalia to ensure they work in both mammals and insects. These terms are used in the AISM ontology; this will ensure that...

From discussion on #3197 with @cmungall . Should a different relation be used in logical definition of [mandibular symphyseal tooth](http://purl.obolibrary.org/obo/UBERON_0018299) for connection to [mandibular symphyseal region](http://purl.obolibrary.org/obo/UBERON_0018542)?

ensure meso-epithelium, ecto-epithelium, and endo-epithelium classification is correct

1

Following #3197 discussion with @cmungall.

support for quads/named graphs

3

I've seen a few research papers describing "HDTQ" (HDT Quads), but it doesn't seem like any of the HDT tools support this. Is there a plan to support quads? Thanks!

Hi, I was glad to see the new support for quads merged on the `dev` branch. It doesn't look like there were any changes to `hdt-jena`. Would that be hard...